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After the referendum on the independence of East Timor from Indonesia, violence erupted between pro-independence and pro-integration groups. On September 6, 1999 the Ave Maria church in Suai, in the Kovalima regency, in which civilians were taking refuge, was attacked by pro-integration militias Laksaur and Mahidi. The militias entered the church with homemade firearms and sharp weapons, killing 27 people.

At the time of the attack on the church in Suai, Herman Sedyono, an Indonesian Army Officer, was the regent or Chief of Kovalima regency and as such the head of government and the head of the regional authorities.

Before the attack a meeting took place at the official residence of Herman Sedyono. Herman Sedyono and the four other accused, Lilik Kushardianto,  Ahmad Syamsuddin, Sugito (Indonesian military officials) and Gatot Subyakto (a police officer) were all present at the incident at the Suai Church.

The Court found that grave human rights violations, in the form of murder as a crime against humanity, had taken place at the Suai Church. The crimes against humanity were committed by militia groups Laksaur and Mahidi. The Court found insufficient proof that the accused were responsible for the attacks on the basis of command responsibility. With regard to Herman Sedyono and Gatot Subyakto, the Court found that they were not military commanders or persons that effectively act as military commanders, as Sedyono was in function of head of the government and Subyakto was a police officer. The Court concluded that there was no organisational relation between the militias and the accused and that the accused had no effective control over the militias, so that the accused could not be held responsible for their actions. 

The Ad Hoc Tribunal acquitted the Accused of both charges, as it found none of his subordinates to have committed serious human rights abuses. In addition, the Tribunal found that the Accused has not disregarded important information and has acted in the best of his power to stop the human rights violations.

East Timor’s foreign minister described the judgment as ‘scandalous’, whereas activists in Indonesia considered the judgments of the Ad Hoc Tribunal to be “mock trials...[as] a result of pressure from the military.” Florendo de Jesus, one of the witnesses, testified that he had recognized several people among the attackers as TNI (Indonesian National Armed Forces) members, one of them being his own uncle. The public outrage, mostly taking place in East Timor, came as a consequence of a belief that the Ad Hoc Tribunal is failing to try the Indonesian commanders involved in the violence, as well as from the previous acquittals, specifically those of army Lieutenant Colonel Asep Kuswani, police Lieutenant Colonel Adios Salova and mayor Leonita Martins.

Following violent clashes between two groups, one in favor of independence of East Timor and one against it, people of the former group sought refuge. In Liquiça, they hid in a church. In Diri, they hid in the house of one of their foremen. The attacks by an anti-independence militia caused the death and injury of many. It is claimed that several soldiers took part in the attacks. The question was whether the commander, Suratman, present in the area at time of both attacks, could be held responsible for what happened.

According to the Indonesian Ad Hoc Tribunal for East Timor, this could not be done. The involvement of his personnel could not be established and it considered the militia to be completely separate from the military. Thus, the Tribunal established that he had no effective control over those who actually committed the Crimes Against Humanity. The Tribunal could not conclude that Suratman had not taken enough action to prevent human rights violations from taking place. According to the Tribunal, he was there to look for a solution to the best of his abilities. Suratman was acquitted, which added to the international community’s concern about the effectiveness of the Tribunal.

In October 2001, six men were arrested in Bosnia and Herzegovina for their alleged involvement in the bombing of the US Embassy in Sarajevo (Bosnia and Herzegovina). Later, they were handed over to the US and transferred to the US Naval Base at Guantanamo Bay (Cuba).

In 2004, the men filed a petition for a writ of habeas corpus (a legal action in which the petitioners challenge the legality of their detention). In 2005, the US District Court ruled that Guantanamo detainees do not have habeas corpus rights. The detainees appealed the decision. In the aftermath of the adoption of the Military Commissions Act in 2006, the US Government requested the dismissal of the case, arguing that the federal court no longer had jurisdiction to hear the case.

The Court of Appeals found that the Military Commissions Act indeed removed the jurisdiction of federal courts to hear habeas corpus petitions from Guantanamo detainees. Accordingly, the Court of Appeals dismissed the detainee’s petitions on the grounds of lack of jurisdiction.

During the armed conflict that took place on the territory of the former Yugoslavia, Bosnian Serb forces including the Army of the Republika Srpska (RS), the Police and paramilitary forces perpetrated attacks against the civilian population in the Rogatica municipality by detaining, murdering, raping and abusing persons of Muslim and Croat ethnicity. The Accused, Radisav Ljubinac, was a member of the RS living in Rogatica in 1995.

By a judgment of 25 April 2007, Section I of the War Crimes Chamber in the Court of Bosnia and Herzegovina convicted the Accused of crimes against humanity. The Court found that the Accused acted as the driver transferring women, children and a small number of remaining adult men from the villages and settlements in Seljani to the camp in Rogatica and from then on, transferring the women and children to Hreša. He also drove a group of civilians, including children, to the village of Duljevac whereupon they were used as human shields in front of the Serb soldiers. The Court also found that on a number of occassions, the Accused kicked and punched the detained civilians at the Rasadnik camp. He was sentenced to 10 years’ imprisonment.