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Indonesia illegally occupied East Timor from 1975 until 2002. In the course of this occupation, members of the Indonesian Armed Forces (TNI) collaborated with local militia groups for the purposes of identifying, questioning and attacking alleged or known independence supporters.

In 1999, the Accused, Francisco dos Santos Laku, was a member of the TNI. He travelled in a convoy of cars to a militia checkpoint, with an individual in custody. The individual was then handed over to the militia members who were to question and then to kill him, on Laku’s orders.

The Special Panels for Serious Crimes convicted the Accused of murder, contrary to the criminal law applicable at the time. He was sentenced to 8 years’ imprisonment. Interestingly, although the Panel made findings as to the widespread and systematic nature of the crimes perpetrated by the militia, neither the indictment nor the final judgement charged the Accused with murder as a crime against humanity, a more serious offence.

In 1990, several Mexican nationals, executing an assignment from the United States Drug Enforcement Agency, abducted one of the persons suspected of involvement in the murder of a DEA official. He was eventually acquitted of all charges by an American Court and returned to Mexico. Alvarez-Machain attempted to take legal action against the Mexican nationals involved in his arrest, and against the United States. In first instance, the Court rejected the action against the United States, but established Sosa’s liability. The three-judge panel of the Court of Appeals confirmed Sosa’s liability, establishing that his involvement in the arbitrary arrest and detention of Alvarez-Machain constituted a breach of the ‘law of nations’. Concerning the liability of the United States, the Court found that the issue was of such important nature that it remanded the question and initiated an en banc (full court) hearing to decide on it.

On 12 June 2002, the Special Panel for Serious Crimes of the Dili District Court, East Timor, issued an indictment against Paulo Gonsalves, Marcelino Leto Bili Purificasao and Rosalino Pires, respectively the commander, deputy commander, and a member of the Halilintar Merah Putih militia group based in the subdistrict of Atabae in East Timor. According to the allegations, several victims alleged to be supporters of East Timor’s independence from Indonesia were detained, beaten, and raped by the three members of Halilintar Merah Putih in the period between February and September 1999. In that period, numerous pro-Indonesian militia groups operated throughout East Timor attacking pro-independence supporters with the goal to gain autonomy within Indonesia.

Following the decision of the Indonesian government taken in early 1999 to offer East Timor the opportunity to vote for independence or for autonomy within the Republic of Indonesia, violence erupted in East Timor. The defendants in this case took part in a widespread or systematic attack directed against civilians that were in favour of an independent East Timor. One of the accused, Herman Sedyono, was the Bupati (District Administrator) of the Covalima District, one of the 13 districts in East Timor. As such, he was bearing the primary responsibility for maintaining peace and security in the region. Most of the other accused were Commander or just member of the Indonesian security authorities (TNI) or the Indonesian police force (POLRI), which were both promoting autonomy within the Republic of Indonesia.

In 1999, the Mahidi and the Laksaur pro-Indonesian militia groups, with the help of the TNI and POLRI, and with support from the Covalima District administration, repeatedly committed attacks against the Covalima population (mainly against those that were in favour of independence). The attacks involved crimes such as unlawful arrests, destruction of property, detention, and murder. The 16 accused were charged with encouraging, assisting and failing to stop, arrest or prosecute the perpetrators of the crimes.